Detailed information of SNP:
|
SNP ID:
sf0802231203(Gbrowse)
Chromosome: chr08 Position: 2231203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.20% | 20.80% |
| All Indica | 798 | 64.41% | 35.59% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 58.40% | 41.60% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802231203 | G->A | INTERGENIC | None |