Detailed information of SNP:
|
SNP ID:
sf0802244272(Gbrowse)
Chromosome: chr08 Position: 2244272 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 61.53% | 38.47% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 54 | 57.41% | 42.59% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802244272 | T->A | INTERGENIC | None |