Detailed information of SNP:
|
SNP ID:
sf0802249537(Gbrowse)
Chromosome: chr08 Position: 2249537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.06% | 9.94% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802249537 | C->T | INTERGENIC | None |