Detailed information of SNP:
|
SNP ID:
sf0802256337(Gbrowse)
Chromosome: chr08 Position: 2256337 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.23% | 42.77% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802256337 | C->G | LOC_Os08g04540(LOC_Os08g04540.1) | Synonymous |