Detailed information of SNP:
|
SNP ID:
sf0802259822(Gbrowse)
Chromosome: chr08 Position: 2259822 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 59.74% | 40.26% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 483 | 7.87% | 92.13% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 92.31% | 7.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 322 | 10.25% | 89.75% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802259822 | T->A | INTERGENIC | None |