Detailed information of SNP:
|
SNP ID:
sf0802262995(Gbrowse)
Chromosome: chr08 Position: 2262995 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 90.87% | 9.13% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 494 | 86.84% | 13.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 332 | 81.02% | 18.98% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802262995 | G->A | INTERGENIC | None |