Detailed information of SNP:
|
SNP ID:
sf0802263282(Gbrowse)
Chromosome: chr08 Position: 2263282 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 60.51% | 39.49% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 60 | 51.67% | 48.33% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802263282 | A->G | INTERGENIC | None |