Detailed information of SNP:
|
SNP ID:
sf0802265536(Gbrowse)
Chromosome: chr08 Position: 2265536 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1297 | 88.05% | 11.95% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 385 | 60.52% | 39.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 273 | 58.24% | 41.76% |
| Tropical Japonica | 63 | 65.08% | 34.92% |
| Japonica Intermediate | 49 | 67.35% | 32.65% |
| Group VI/Aromatic | 7 | 85.71% | 14.29% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802265536 | T->C | LOC_Os08g04550(LOC_Os08g04550.1) | Synonymous |