Detailed information of SNP:
|
SNP ID:
sf0802281525(Gbrowse)
Chromosome: chr08 Position: 2281525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.46% | 3.54% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802281525 | C->T | LOC_Os08g04570(LOC_Os08g04570.1) | Non-Synonymous SNP |