Detailed information of SNP:
|
SNP ID:
sf0802299934(Gbrowse)
Chromosome: chr08 Position: 2299934 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.29% | 41.71% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802299934 | C->T | INTERGENIC | None |