Detailed information of SNP:
|
SNP ID:
sf0802370530(Gbrowse)
Chromosome: chr08 Position: 2370530 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 55.04% | 44.96% |
| All Indica | 781 | 22.41% | 77.59% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 359 | 22.84% | 77.16% |
| Indica II | 212 | 25.00% | 75.00% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802370530 | G->C | INTERGENIC | None |