Detailed information of SNP:
|
SNP ID:
sf0802404707(Gbrowse)
Chromosome: chr08 Position: 2404707 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 99.29% | 0.71% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802404707 | T->A | INTERGENIC | None |