Detailed information of SNP:
|
SNP ID:
sf0802410062(Gbrowse)
Chromosome: chr08 Position: 2410062 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 79.36% | 20.64% |
| All Indica | 796 | 72.99% | 27.01% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 211 | 61.61% | 38.39% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802410062 | T->A | INTERGENIC | None |