Detailed information of SNP:
|
SNP ID:
sf0802471653(Gbrowse)
Chromosome: chr08 Position: 2471653 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 94.24% | 5.76% |
| All Indica | 718 | 99.86% | 0.14% |
| All Japonica | 404 | 82.92% | 17.08% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 331 | 99.70% | 0.30% |
| Indica II | 187 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 267 | 80.52% | 19.48% |
| Tropical Japonica | 80 | 83.75% | 16.25% |
| Japonica Intermediate | 57 | 92.98% | 7.02% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802471653 | T->C | INTERGENIC | None |