Detailed information of SNP:
|
SNP ID:
sf0802566457(Gbrowse)
Chromosome: chr08 Position: 2566457 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 78.86% | 21.14% |
| All Indica | 790 | 99.87% | 0.13% |
| All Japonica | 488 | 42.01% | 57.99% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 29.79% | 70.21% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802566457 | G->C | LOC_Os08g05010(LOC_Os08g05010.1) | INTRON |