Detailed information of SNP:
|
SNP ID:
sf0802599737(Gbrowse)
Chromosome: chr08 Position: 2599737 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 95.87% | 4.13% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 59 | 35.59% | 64.41% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802599737 | C->T | LOC_Os08g05060(LOC_Os08g05060.1) | Non-Synonymous SNP |