Detailed information of SNP:
|
SNP ID:
sf0802711501(Gbrowse)
Chromosome: chr08 Position: 2711501 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 85.13% | 14.87% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802711501 | A->G | LOC_Os08g05210(LOC_Os08g05210.1) | INTRON |