Detailed information of SNP:
|
SNP ID:
sf0802713872(Gbrowse)
Chromosome: chr08 Position: 2713872 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1311 | 51.49% | 48.51% |
| All Indica | 740 | 80.41% | 19.59% |
| All Japonica | 451 | 12.86% | 87.14% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 347 | 96.25% | 3.75% |
| Indica II | 189 | 75.66% | 24.34% |
| Indica Intermediate | 204 | 57.84% | 42.16% |
| Temperate Japonica | 316 | 1.90% | 98.10% |
| Tropical Japonica | 74 | 56.76% | 43.24% |
| Japonica Intermediate | 61 | 16.39% | 83.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802713872 | G->T | LOC_Os08g05220(LOC_Os08g05220.1) | INTRON |