Detailed information of SNP:
|
SNP ID:
sf0802716841(Gbrowse)
Chromosome: chr08 Position: 2716841 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 95.41% | 4.59% |
| All Indica | 735 | 91.97% | 8.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 190 | 98.42% | 1.58% |
| Indica Intermediate | 173 | 73.41% | 26.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802716841 | A->G | LOC_Os08g05220(LOC_Os08g05220.1) | Non-Synonymous SNP |