Detailed information of SNP:



SNP ID: sf0802772822(Gbrowse)

Chromosome: chr08

Position: 2772822
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 95.63% 4.37%
All Indica798 92.48% 7.52%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 98.13% 1.87%
Indica II213 86.38% 13.62%
Indica Intermediate210 88.57% 11.43%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0802772822 C->T LOC_Os08g05290(LOC_Os08g05290.1) INTRON