Detailed information of SNP:
|
SNP ID:
sf0802773175(Gbrowse)
Chromosome: chr08 Position: 2773175 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 85.60% | 14.40% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802773175 | T->C | LOC_Os08g05290(LOC_Os08g05290.1) | Synonymous |