Detailed information of SNP:
|
SNP ID:
sf0802789440(Gbrowse)
Chromosome: chr08 Position: 2789440 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 96.43% | 3.57% |
| All Indica | 728 | 93.96% | 6.04% |
| All Japonica | 468 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 91.71% | 8.29% |
| Indica II | 184 | 93.48% | 6.52% |
| Indica Intermediate | 194 | 98.45% | 1.55% |
| Temperate Japonica | 322 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802789440 | T->C | LOC_Os08g05320(LOC_Os08g05320.2) | INTRON |
| sf0802789440 | T->C | LOC_Os08g05320(LOC_Os08g05320.3) | INTRON |