Detailed information of SNP:
|
SNP ID:
sf0802883970(Gbrowse)
Chromosome: chr08 Position: 2883970 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.80% | 36.20% |
| All Indica | 790 | 93.42% | 6.58% |
| All Japonica | 495 | 24.85% | 75.15% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 334 | 21.26% | 78.74% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802883970 | C->G | LOC_Os08g05440(LOC_Os08g05440.1) | INTRON |