Detailed information of SNP:
|
SNP ID:
sf0802884226(Gbrowse)
Chromosome: chr08 Position: 2884226 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1163 | 70.94% | 29.06% |
| All Indica | 604 | 47.19% | 52.81% |
| All Japonica | 438 | 98.17% | 1.83% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 290 | 33.45% | 66.55% |
| Indica II | 161 | 62.11% | 37.89% |
| Indica Intermediate | 153 | 57.52% | 42.48% |
| Temperate Japonica | 300 | 98.33% | 1.67% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802884226 | T->C | LOC_Os08g05440(LOC_Os08g05440.1) | Synonymous |