Detailed information of SNP:
|
SNP ID:
sf0802887571(Gbrowse)
Chromosome: chr08 Position: 2887571 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.44% | 43.56% |
| All Indica | 797 | 42.16% | 57.84% |
| All Japonica | 495 | 74.55% | 25.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 49.47% | 50.53% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 333 | 78.68% | 21.32% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802887571 | G->T | LOC_Os08g05440(LOC_Os08g05440.1) | INTRON |