Detailed information of SNP:
|
SNP ID:
sf0802943464(Gbrowse)
Chromosome: chr08 Position: 2943464 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1262 | 98.65% | 1.35% |
| All Indica | 642 | 97.66% | 2.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 256 | 100.00% | 0.00% |
| Indica II | 201 | 95.02% | 4.98% |
| Indica Intermediate | 185 | 97.30% | 2.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802943464 | T->G | INTERGENIC | None |