Detailed information of SNP:
|
SNP ID:
sf0802944646(Gbrowse)
Chromosome: chr08 Position: 2944646 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.87% | 36.13% |
| All Indica | 789 | 60.84% | 39.16% |
| All Japonica | 494 | 76.72% | 23.28% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 48.11% | 51.89% |
| Indica II | 210 | 81.90% | 18.10% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 332 | 73.80% | 26.20% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802944646 | C->T | INTERGENIC | None |