Detailed information of SNP:
|
SNP ID:
sf0802959652(Gbrowse)
Chromosome: chr08 Position: 2959652 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 99.00% | 1.00% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 97.11% | 2.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802959652 | A->G | INTERGENIC | None |