Detailed information of SNP:
|
SNP ID:
sf0802983192(Gbrowse)
Chromosome: chr08 Position: 2983192 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 68.48% | 31.52% |
| All Indica | 795 | 62.77% | 37.23% |
| All Japonica | 494 | 86.44% | 13.56% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 52.41% | 47.59% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 208 | 67.31% | 32.69% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0802983192 | G->A | LOC_Os08g05580(LOC_Os08g05580.1) | INTRON |