Detailed information of SNP:
|
SNP ID:
sf0803042981(Gbrowse)
Chromosome: chr08 Position: 3042981 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.44% | 32.56% |
| All Indica | 796 | 55.28% | 44.72% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 54.28% | 45.72% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 209 | 39.71% | 60.29% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803042981 | A->G | INTERGENIC | None |