Detailed information of SNP:
|
SNP ID:
sf0803043178(Gbrowse)
Chromosome: chr08 Position: 3043178 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.25% | 32.75% |
| All Indica | 797 | 55.21% | 44.79% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 54.81% | 45.19% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803043178 | T->C | INTERGENIC | None |