Detailed information of SNP:
|
SNP ID:
sf0803056973(Gbrowse)
Chromosome: chr08 Position: 3056973 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1274 | 93.80% | 6.20% |
| All Indica | 673 | 88.26% | 11.74% |
| All Japonica | 482 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 307 | 86.97% | 13.03% |
| Indica II | 197 | 95.43% | 4.57% |
| Indica Intermediate | 169 | 82.25% | 17.75% |
| Temperate Japonica | 323 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803056973 | T->C | INTERGENIC | None |