Detailed information of SNP:
|
SNP ID:
sf0803094831(Gbrowse)
Chromosome: chr08 Position: 3094831 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.71% | 31.29% |
| All Indica | 799 | 62.45% | 37.55% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 50.13% | 49.87% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803094831 | C->T | INTERGENIC | None |