Detailed information of SNP:
|
SNP ID:
sf0803220455(Gbrowse)
Chromosome: chr08 Position: 3220455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 81.33% | 18.67% |
| All Indica | 747 | 67.60% | 32.40% |
| All Japonica | 490 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 64.49% | 35.51% |
| Indica II | 198 | 76.77% | 23.23% |
| Indica Intermediate | 197 | 63.96% | 36.04% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803220455 | G->A | INTERGENIC | None |