Detailed information of SNP:
|
SNP ID:
sf0803233772(Gbrowse)
Chromosome: chr08 Position: 3233772 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 98.15% | 1.85% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 485 | 95.46% | 4.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 93.56% | 6.44% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803233772 | C->T | INTERGENIC | None |