Detailed information of SNP:
|
SNP ID:
sf0803243151(Gbrowse)
Chromosome: chr08 Position: 3243151 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 95.52% | 4.48% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 87.01% | 12.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 82.01% | 17.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803243151 | A->C | INTERGENIC | None |