Detailed information of SNP:
|
SNP ID:
sf0803261569(Gbrowse)
Chromosome: chr08 Position: 3261569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.54% | 6.46% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 487 | 82.55% | 17.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 326 | 76.07% | 23.93% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803261569 | C->T | INTERGENIC | None |