Detailed information of SNP:
|
SNP ID:
sf0803416675(Gbrowse)
Chromosome: chr08 Position: 3416675 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1237 | 70.57% | 29.43% |
| All Indica | 618 | 58.74% | 41.26% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 278 | 58.63% | 41.37% |
| Indica II | 180 | 72.78% | 27.22% |
| Indica Intermediate | 160 | 43.12% | 56.88% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803416675 | A->G | INTERGENIC | None |