Detailed information of SNP:
|
SNP ID:
sf0803417309(Gbrowse)
Chromosome: chr08 Position: 3417309 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 88.89% | 11.11% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803417309 | G->A | INTERGENIC | None |