Detailed information of SNP:
|
SNP ID:
sf0803429218(Gbrowse)
Chromosome: chr08 Position: 3429218 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.09% | 14.91% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 495 | 60.20% | 39.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 48.65% | 51.35% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803429218 | A->G | INTERGENIC | None |