Detailed information of SNP:
|
SNP ID:
sf0803438486(Gbrowse)
Chromosome: chr08 Position: 3438486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.08% | 31.92% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 495 | 39.19% | 60.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 48.35% | 51.65% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803438486 | G->A | LOC_Os08g06240(LOC_Os08g06240.1) | Synonymous |