Detailed information of SNP:
|
SNP ID:
sf0803451488(Gbrowse)
Chromosome: chr08 Position: 3451488 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.21% | 49.79% |
| All Indica | 794 | 25.57% | 74.43% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 211 | 56.87% | 43.13% |
| Indica Intermediate | 208 | 18.75% | 81.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803451488 | G->A | INTERGENIC | None |