Detailed information of SNP:
|
SNP ID:
sf0803456139(Gbrowse)
Chromosome: chr08 Position: 3456139 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 87.30% | 12.70% |
| All Indica | 775 | 99.87% | 0.13% |
| All Japonica | 496 | 64.72% | 35.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 193 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 55.69% | 44.31% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803456139 | T->C | INTERGENIC | None |