Detailed information of SNP:
|
SNP ID:
sf0803469131(Gbrowse)
Chromosome: chr08 Position: 3469131 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.05% | 45.95% |
| All Indica | 799 | 20.90% | 79.10% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 6.67% | 93.33% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 8.53% | 91.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803469131 | A->G | INTERGENIC | None |