Detailed information of SNP:
|
SNP ID:
sf0803471336(Gbrowse)
Chromosome: chr08 Position: 3471336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1289 | 95.97% | 4.03% |
| All Indica | 757 | 99.87% | 0.13% |
| All Japonica | 413 | 88.14% | 11.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 181 | 99.45% | 0.55% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 96.82% | 3.18% |
| Tropical Japonica | 78 | 58.97% | 41.03% |
| Japonica Intermediate | 52 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803471336 | C->T | INTERGENIC | None |