Detailed information of SNP:
|
SNP ID:
sf0803531239(Gbrowse)
Chromosome: chr08 Position: 3531239 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1165 | 95.88% | 4.12% |
| All Indica | 724 | 97.38% | 2.62% |
| All Japonica | 323 | 91.33% | 8.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 99.17% | 0.83% |
| Indica II | 155 | 92.26% | 7.74% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 241 | 96.27% | 3.73% |
| Tropical Japonica | 48 | 72.92% | 27.08% |
| Japonica Intermediate | 34 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803531239 | C->T | LOC_Os08g06370(LOC_Os08g06370.1) | INTRON |