Detailed information of SNP:
|
SNP ID:
sf0803656244(Gbrowse)
Chromosome: chr08 Position: 3656244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 76.53% | 23.47% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 472 | 37.29% | 62.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 36.10% | 63.90% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803656244 | G->A | INTERGENIC | None |