Detailed information of SNP:
|
SNP ID:
sf0803657899(Gbrowse)
Chromosome: chr08 Position: 3657899 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 77.02% | 22.98% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 492 | 40.24% | 59.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 39.76% | 60.24% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803657899 | G->A | LOC_Os08g06478(LOC_Os08g06478.1) | UTR_5_PRIME |