Detailed information of SNP:
|
SNP ID:
sf0803729366(Gbrowse)
Chromosome: chr08 Position: 3729366 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 95.62% | 4.38% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 472 | 87.29% | 12.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 85.13% | 14.87% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803729366 | T->C | INTERGENIC | None |