Detailed information of SNP:
|
SNP ID:
sf0803820177(Gbrowse)
Chromosome: chr08 Position: 3820177 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 96.38% | 3.62% |
| All Indica | 789 | 99.87% | 0.13% |
| All Japonica | 415 | 88.92% | 11.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 99.31% | 0.69% |
| Tropical Japonica | 75 | 46.67% | 53.33% |
| Japonica Intermediate | 49 | 91.84% | 8.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803820177 | C->A | INTERGENIC | None |